PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_A61094919.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 797aa    MW: 88660.7 Da    PI: 7.9069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_A61094919.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18293392198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v F++
  Traes_2BS_A61094919.2 293 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSR 379
                            89**************************555566778***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  e++lv+++++
  Traes_2BS_A61094919.2 380 ID-PEGKLVMGFRK 392
                            87.67767777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-31287399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-21290396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-23291392No hitNo description
PfamPF023622.0E-15293392IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265293394IPR003340B3 DNA binding domain
SMARTSM010199.3E-22293393IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128549599IPR011124Zinc finger, CW-type
PfamPF074968.7E-11554596IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MAPSQMWSTP TVHMSQNVAD RKDSYVKSWR PPTGQISSQW RQNHQLWNMS TIQADLQQRL  60
AYEFDRPSGS EKLPPGRTFI HAQEKKSDDM HDRPTTPAGM GLIIRDRYAN GLGQQTSMDP  120
THSSTPYQRE GPNPNSLHDP SHHVGESDPL SSRKGIISDG GSTVSTGFKL DPHHPSILKD  180
DAASTLPTMG GYTITNYPPV PGRSDHLRII PNNPQQPPTT VPLSVVQKQF YSHSVIEPNY  240
QAQFRNGKPR MDPKARSELL PRYWPRITDK ELQHLSGEYP KNSNSNSVIT PLFEKMLSAS  300
DAGRIGRLVL PKKCAEAYFP PISQPEGLPL KVQDASGKEW VFQFRFWPNN NSRMYVLEGV  360
TPCIQSMHLQ AGDTVSFSRI DPEGKLVMGF RKTKTQEQIF RQEEPTKPAN AAPNLPDVNV  420
NVTAPDSSPN SSLVRPNKVN TENKDSSPVE QAASKIDKGG VAQKEGSGTV RTSPGPVKRK  480
ATSIGPKIKR FRIDNEESME LKITWEEAQE LLRPPLKAPS VVIVDGHEFE EYEEPPVLGR  540
KTYFVTDQSG ENHQWAQCED CSKWRKLPVD ALLPSKWTCS DNKWDPERTT CVSPQEASME  600
ELAELIPIKA GAAKKAKLRM DTDSIDVSDG LDTLANLAIL GEGESLPSQP TTKHPRHRPG  660
CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMLRR EKRASEKESD ELPRKKEQGQ  720
SSESIPQDPL PASTSPSSTP QKVSGNGDDA EEAMEHTMAS SPMKNQIDLN IQPEREDEQS  780
PKSDAVGAMR LPRENAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1329237913102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236982.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLW5BMP40.0W5BMP4_WHEAT; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-146HSI2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]